Publication / Conference

A01 | A02 | A03 


A03-1 Togashi-Team

  • Tamiki Komatsuzaki
    "Energy landscapes derived from single molecule spectroscopy and complex networks"
    Architecture, dynamics, and functionality of molecular biosystems, Okazaki, Japan, Mar. 30-31, 2015
  • Chun-Biu Li
    "Single Molecule Time Series Analysis of F1-ATPase to Unravel the Role of ATP Hydrolysis and Thermal Fluctuations"
    Seminar at Max Planck Institute of Colloids and Interfaces, Max Planck Institute of Colloids and Interfaces, Jan. 7, 2015
  • Holger Flechsig
    "Conformational dynamics of molecular machines and motors from coarse-grained elastic network modeling"
    Tutorial talk, Beijing Computational Science Research Center (CSRC), Beijing, China, Nov. 19, 2014
  • Tamiki Komatsuzaki
    "A kinetic disconnectivity graph to decode timescale hierarchy buried in reaction networks"
    XIXth International Workshop on Quantum Systems in Chemistry, Physics and Biology, Fullon Hotel Tamsui Fishermen's Wharf, Nov. 11-17, 2014
  • Chun-Biu Li
    "Challenges in Understanding Complex Systems at the Single Molecule Level"
    New Challenges in Complex Systems Science, Nishiwaseda Campus, Waseda University, Oct. 24-26, 2014
  • Tamiki Komatsuzaki
    "Chemical Reaction Dynamics and Chaos"
    New Challenges in Complex Systems Science, Nishiwaseda Campus, Waseda University, Oct. 24-26, 2014
  • Hiroshi Teramoto
    "Extracting coherent molecular vibrational modes by nonlinear time series analysis"
    Workshop on Theory and Applications of Random/Non-autonomous Dynamical Systems, Dynamical Systems Group, Department of Mathematics, Imperial College London, Sep. 8-15, 2014
  • Tamiki Komatsuzaki
    "Energy landscapes learned from time series and networks"
    Energy Landscapes : From Single Molecules to Soft Matter, Durham University, Aug. 15-21, 2014
  • Tamiki Komatsuzaki
    "Chance and Necessity in Reactions Under Chaos and Stochastic Fluctuation"
    The 10th AIMS Conference on Dynamical Systems, Differential Equations and Applications, Universidad Autónoma de Madrid, Jul. 7-11, 2014
  • Hiroshi Teramoto, Mikito Toda, Tamiki Komatsuzaki
    "Extracting Cooperative modes between a biological molecule and water molecules"
    International Workshop "Over the Barriers of Transition Paths: Dynamical Processes in Proteins and Complex Molecular Systems", Tokyo Institute of Technology, Jun. 28, 2014
  • Tamiki Komatsuzaki
    "Energy Landscapes Constructed From Single-molecule Time Series And Reaction Networks"
    Macromolecular dynamics: structure, function and diseases, Kavli Institute for Theoretical Physics China, Jun. 15- Jul. 11, 2014
  • Tamiki Komatsuzaki
    "Theories Should Meet Experiments: What Can We Extract From Time Series Data?"
    Beijing Computational Science Research Center (CSRC) Seminar, Beijing Computational Science Research Center (CSRC), Jun. 23, 2014
  • Tamiki Komatsuzaki
    "Energy Landscapes Constructed From Single-Molecule Time Series and Reaction Networks"
    The 2014 Les Houches - TSRC Protein Dynamics Workshop, Ecole de Physique des Houches, May. 18-23, 2014
  • Chun-Biu Li
    "Time Series, Networks and Dynamics: A Perspective from the Information Theory"
    The 14th RIES-HOKUDAI International Symposium mou, CHÂTERAISÉ Gateaux Kingdom SAPPORO, Dec. 11-12, 2013
  • Shinnosuke Kawai, Hiroshi Teramoto, Tamiki Komatsuzaki
    "Essential Coordinates to Describe the Dynamics of Many-atom Systems"
    5th JCS International Symposium on Theoretical Chemistry, Todai-ji Culture Center, Dec. 2-6, 2013
  • Chun-Biu Li
    "Inferring Kinetics Objectively from Single Molecule Time Series with Full Information Content"
    第51回日本生物物理学会年会, 京都市, 2013年10月28-30日
  • Chun-Biu Li
    "When Computational Mechanics Meets Single Molecule Time Series"
    2013 International Symposium on Nonlinear Theory and its Applications, Santa Fe, USA, Sep. 8-11, 2013
  • Tamiki Komatsuzaki
    "Revisiting Energy Landscape, Timescale, Coarse-Graining"
    Chemistry and Dynamics in Complex Environments, Telluride, CO., USA, Jun. 25-29, 2013
  • Tamiki Komatsuzaki
    "A microscopic ruler tells us the underlying networks in single molecule measurements"
    Nanoscale Science Seminars 2013:A Microscopic ruler tells us the underlying networks in single molecule measurements, Stuttgart, Germany, 41407
  • Yuichi Togashi
    ""Minorities" may Rule Reaction-Diffusion Processes in the Cell"
    1st International Symposium of the Mathematics on Chromatin Live Dynamics, Higashi-Hiroshima, Japan, March 15-16, 2013
  • Tamiki Komatsuzaki
    "Toward Deciphering Molecular Individuality in Systems Biology"
    French‐Japanese Seminar on "Bioinspired Methods and Applications", Tokyo, Japan, Feb. 4-6, 2013
  • Tamiki Komatsuzaki
    "Let Single Molecule Time Series Tell for Itself: Energy Landscape and Complex Network"
    4-th France-Japan Joint Seminar: Imaging of spatiotemporal hierarchies in living cells, Hyogo, Japan, Jan. 7-11, 2013
  • Tamiki Komatsuzaki
    "Theories Should Meet Experiments: What Can We Extract from Time Series Data?"
    Telluride Summer Workshop "Characterizing Landscapes: From Biomolecules to Cellular Networks", CO, USA, June 11-15, 2012
  • Tamiki Komatsuzaki
    "Transition States and Reaction Coordinates in Complex Systems"
    Telluride Summer Workshop"Searching for Reaction Coordinates and Order Parameters", CO, USA, June 17-21, 2012
  • Yuichi Togashi
    "Modeling of Molecular Networks in the Cell: Minority and Crowd"
    Brock-Kobe Bilateral Workshop on Scientific Computation, Kobe, Japan, May 21-22, 2012
  • Hiroshi Teramoto, Mikito Toda and Tamiki Komatsuzaki
    "Analysis of Dynamical Systems with Large Degrees of Freedom in terms of normally hyperbolic invariant manifolds and their Breakdown"
    International Workshop on Anomalous Statistics, Generalized Entropies and Information Geometry, Nara, Japan, March. 5-7, 2012
  • Tamiki Komatsuzaki
    "Theories Should Meet Measurements: What Can We Extract from Time Series Data?"
    The 2012 WPI-AIMR Annual Workshop, Sendai International Center, Feb. 20-23, 2012
  • Naoki Miyagawa, Hiroshi Teramoto, Chun Biu Li and Tamiki Komatsuzaki
    "Spatial Heterogeneity of Multivariate Dependence"
    International Conference of Numerical Analysis and Applied Mathematics, Greece, Sep. 19-25, 2011
  • Shinnosuke Kawai, Hiroshi Teramoto and Tamiki Komatsuzaki
    "Low-dimensional Description of Complex Many-Body Molecular Systems by Extracting Important Dynamical Modes"
    14th Asian Chemical Congress, Bangkok, Thailand, Sep. 5-8, 2011
  • Tamiki Komatsuzaki
    " "Mining" an effective Energy landscape of a protein from single molecule time series"
    Telluride Workshop on Protein Dynamics, Telluride. CO, Aug. 1-5, 2011
  • Tamiki Komatsuzaki
    "How can we "mine" effective energy landscapes of proteins from single molecule time series in the violation of local equilibrium and detailed balance?"
    Telluride Workshop on Exploring energy landscapes, from single molecules to mesoscopic models, Telluride. CO, July 25-August 5, 2011
  • Tamiki Komatsuzaki
    " "Digging" single molecule time series to "mine" the underlying effective energy landscape"
    Telluride Workshop on Single, Telluride. CO, June 27-July 1, 2011
  • Tamiki Komatsuzaki
    "Mining State Space Network from Single-Molecule Time Series"
    Telluride Workshop on Complexity of Kinetics and Dynamics in Many Dimension, Telluride. CO, June. 20-24, 2011
  • Chun-Biu Li
    "Either contruction of KS from dwell-time time series, or modeling of QD blinking"
    Telluride Workshop on Complexity of Kinetics and Dynamics in Many Dimension, Telluride. CO, June. 20-24, 2011

A03-2 Imada-Team

  • Takayuki Uchihashi
    "Application of high-speed atomic force microscopy"
    12th International Conference on Frontiers of Polymers and Advanced Materials, Auckland, New Zealand, Dec, 8-13, 2013
  • Takayuki Uchihashi
    "High-Speed Atomic Force Microscopy for Imaging of Protein Dynamics"
    2013 MRS Fall Meeting & Exhibit, Symposium: Advances in Scanning Probe Microscopy, Boston, USA, Dec, 1-6, 2013
  • Takayuki Uchihashi
    "High-speed AFM for observing cell dynamics"
    4th Asia-Pacific Symposium on Nanobionics, Melbourne, Australia, Nov, 14-15, 2013
  • Katsumi Imada
    "Common architecture of the soluble components of bacterial flagellar type III secretion system and F/V-type ATPases"
    International Conference of Structural Genomics 2013 Structural Life Science, Keio Plaza Hotel Sapporo, Sapporo, 41486
  • Takayuki Uchihashi
    "Single-Molecule Imaging of Proteins at Work with High-Speed Atomic Force Microscopy"
    1. IMS Workshop on "Hierarchical Molecular Dynamics: From Ultrafast Spectroscopy to Single Molecule Measurements", Okazaki, Japan, May 25-26, 2013
  • Katsumi Imada
    "Molecular Mechanism of the bacteral flagellar type III secretion"
    4th France-Japan joint seminar, Harima, Japan, Jan. 6-10, 2013
  • Takayuki Uchihashi and Toshio Ando
    "Image analysis of HS-AFM movies for dynamic events on biological molecules: F1-ATPase and cellulase"
    3rd Kanazawa Bio-AFM Workshop, Kanazawa, Japan, Nov. 5-8, 2012
  • Takayuki Uchihashi and Toshio Ando
    "High-speed atomic force microscopy: A tool for nanobionnics"
    3rd Asia-Pacific Symposium on Nanobionics, Wollongong, Australia, Sep. 19-21, 2012
  • Takayuki Uchihashi
    XXI International Materials Research Congress,, Cancun, Mexico, Aug. 11-16, 2012
  • Takayuki Uchihashi, Noriyuki Kodera and Toshio Ando
    "Direct Visualization of Proteins in Action by High-Speed Atomic Force Microscopy"
    The 10th Asia-Pacific Microscopy Conference (APMC 10), Perth, Australia, Feb. 5-9, 12012
  • Katsumi Imada
    "Assembly mechanism of the stator unit of the sodium driven motor"
    GRC on Sensory Transduction in Microorganisms, Ventura, USA, Jan. 16-20, 2012
  • Katsumi Imada
    "Structural insight into the molecular mechanism of the bacterial flagellar type III secretion system and its evolutionary relation to F1-ATPase."
    XIII International congress of bacteriology and applied microbiology, Sapporo, Japan, Sep. 6-10, 2011