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A02
A02-1 Ishijima-Team
- Nobuhiko Kato, Akihiko Ishijima, Takehiko Inaba, Fumimasa Nomura, Shuichi Takeda and Kingo Takiguchi
"Effects of Lipid Composition and Solution Conditions on the Mechanical Properties of Membrane Vesicles"
Membranes, 5:22-47, 2015 - Yuichi Inoue, Mitsunori Nagata, Hiroshi Matsutaka, Takeru Okada, Masaaki K. Sato, and Akihiko Ishijima
"Single Carbon Nanotube-Based Reversible Regulation of Biological Motor Activity"
ACSnano, 9:3677-3684, 2015 - Yuji Shimogonya, Yoichiro Sawano, Hiromichi Wakebe, Yuichi Inoue, Akihiko Ishijima & Takuji Ishikawa
"Torque-induced precession of bacterial flagella"
Scientific Reports, 5:18488, 2015 - Yuichi Inoue, Akihiko Ishijima
"Local heating of molecular motors using single carbon nanotubes"
Biophysical Reviews, 1:1-8, 2015 - Daichi Morimoto, Erik Walinda, Harumi Fukada, Yu-Shin Sou, Shun Kageyama, Masaru Hoshino, Takashi Fujii, Hikaru Tsuchiya, Yasushi Saeki, Kyohei Arita, Mariko Ariyoshi, Hidehito Tochio, Kazuhiro Iwai, Keiichi Namba, Masaaki Komatsu, Keiji Tanaka and Masahiro Shirakawa
"The unexpected role of polyubiquitin chains in the formation of fibrillar aggregates"
Nature communications, 6:6116, 2015 - Hisatsugu Yamada, Yoshinori Hasegawa, Hirohiko Imai, Yuki Takayama, Fuminori Sugihara, Tetsuya Matsuda, Hidehito Tochio, Masahiro Shirakawa, Shinsuke Sando, Yu Kimura, Akio Toshimitsu, Yasuhiro Aoyama and Teruyuki Kondo
"Magnetic resonance imaging of tumor with a self-traceable phosphorylcholine polymer."
Journal of the American Chemical Society, 137:799-806, 2015 - Takahiro Yamamoto, Naotaka Tsutsumi, Hidehito Tochio, Hidenori Ohnishi, Kazuo Kubota, Zenichiro Kato, Masahiro Shirakawa and Naomi Kondo
"Functional assessment of the mutational effects of human IRAK4 and MyD88 genes."
Molecular immunology, 58:66-76, 2014 - Takeshi Kimura, Naotaka Tsutsumi, Kyohei Arita, Mariko Ariyoshi, Hidenori Ohnishi, Naomi Kondo, Masahiro Shirakawa, Zenichiro Kato and Hidehito Tochio
"Purification, crystallization and preliminary X-ray crystallographic analysis of human IL-18 and its extracellular complexes"
Acta Crystallographica Section F Structural Biology Communications, 70:1351-1356, 2014 - Tatsuya Shima, Takahiro Muraoka, Tsutomu Hamada, Masamune Morita, Masahiro Takagi, Hajime Fukuoka, Yuichi Inoue, Takashi Sagawa, Akihiko Ishijima, Yuki Omata, Takashi Yamashita and Kazushi Kinbara
"Micrometer-Size Vesicle Formation Triggered by UV Light"
Langmuir, 30:7289-7295, 2014 - Naotaka Tsutsumi, Takeshi Kimura, Kyohei Arita, Mariko Ariyoshi, Hidenori Ohnishi, Takahiro Yamamoto, Xiaobing Zuo, Katsumi Maenaka, Enoch Y. Park, Naomi Kondo, Masahiro Shirakawa, Hidehito Tochio and Zenichiro Kato
"The structural basis for receptor recognition of human interleukin-18."
Nature communications, 5:5340, 2014 - Takashi Sagawa, Yu Kikuchi, Yuichi Inoue, Hiroto Takahashi, Takahiro Muraoka, Kazushi Kinbara, Akihiko Ishijima, Hajime Fukuoka
"Response to an Instantaneously Applied Chemotactic Signal."
Biophysical Journal, 107:730–739, 2014 - Masaaki K. Sato,Masaya Toda,Naoki Inomata,Hisataka Maruyama,Yuko Okamatsu-Ogura,Fumihito Arai,Takahito Ono, Akihiko Ishijima and Yuichi Inoue
"Temperature Changes in Brown Adipocytes Detected with a Bimaterial Microcantilever"
Biophysical Journal, 106:2458–2464, 2014 - Erik Walinda, Daichi Morimoto, Kenji Sugase, Tsuyoshi Konuma, Hidehito Tochio and Masahiro Shirakawa
"Solution structure of the ubiquitin-associated (UBA) domain of human autophagy receptor NBR1 and its interaction with ubiquitin and polyubiquitin."
The Journal of biological chemistry, 289:13890-902, 2014 - Hajime Fukuoka, Takashi Sagawa, Yuichi Inoue, Hiroto Takahashi, and Akihiko Ishijima
"Direct Imaging of Intracellular Signaling Components That Regulate Bacterial Chemotaxis."
Science Signaling, 319:ra32, 2014 - Yong-Woon Han, Yasuo Tsunaka, Hiroaki Yokota, Tomoko Matsumoto, GengoKashiwazaki, Hironobu Morinaga, Kaori Hashiya, Toshikazu Bando, Hiroshi Sugiyama and Yoshie Harada
"Construction and Characterization of Cy3- or Cy5-Conjugated Hairpin Pyrrole/Imidazole Polyamides binding to DNA in the Nucleosome."
Biomaterials Science, 2014, 2:297-307, 2014 - Yoshiyuki Sowa, Michio Homma, Akihiko Ishijima, and Richard M. Berry.
"Hybrid-fuel bacterial flagellar motors in Escherichia coli."
Proc Natl Acad Sci U S A, 111:3436-41, 2014 - Yohsuke Yoshinari, Ziya Kalay, and Yoshie Harada
"Observing the rotational diffusion of nanodiamonds with arbitrary nitrogen vacancy center configurations."
Phys. Rev. B, 88:235206, 2013 - Yong-Woon Han, Gengo Kashiwazaki, Hironobu Morinaga, Tomoko Matsumoto, Kaori Hashiya, Toshikazu Bando, Yoshie Harada and Hiroshi Sugiyama
"Effect of single Pyrrole replacement with balanine on DNA binding affinity and sequence specificity of hairpin Pyrrole/Imidazole Polyamides targeting 5´-GCGC-3´"
Bioorganic & Medicinal Chemistry, 21(17):5436-5441, 2013 - Taiichi Tsuyama, Jun-ichi Kishikawa, Yong-Woon Han, Yoshie Harada, Asako Tsubouchi, Hiroyuki Noji, Akira Kakizuka, Ken Yokoyama, Tadashi Uemura and Hiromi Imamura
"In Vivo Fluorescent Adenosine 5′-Triphosphate (ATP) Imaging of Drosophila melanogaster and Caenorhabditis elegans by Using a Genetically Encoded Fluorescent ATP Biosensor Optimized for Low Temperatures"
Analytical Chemistry, 85(16):7889-7896, 2013 - Jens Danielsson, Kohsuke Inomata, Shuhei Murayama, Hidehito Tochio, Lisa Lang, Masahiro Shirakawa and Mikael Oliveberg
"Pruning the ALS-Associated Protein SOD1 for in-Cell NMR"
Journal of the American Chemical Society, 2013 - Yousuke Takaoka, Yoshiyuki Kioi, Akira Morito, Junji Otani, Kyohei Arita, Eishi Ashihara, Mariko Ariyoshi, Hidehito Tochio, Masahiro Shirakawa and Itaru Hamachi
"Quantitative comparison of protein dynamics in live cells and in vitro by in-cell (19)F-NMR"
Chemical communications, 49:2801-2803, 2013 - Ling Chin Hwang, Anthony G Vecchiarelli, Yong-Woon Han, Michiyo Mizuuchi, Yoshie Harada, Barbara E Funnell and Kiyoshi Mizuuchi
"ParA-mediated plasmid partition driven by protein pattern self-organization"
The EMBO Journal, 32:1238-1249, 2013 - Hiroaki Yokota, Yuko Ayabe Chujo, and Yoshie Harada:
"Single-Molecule Imaging of the Oligomer Formation of the Nonhexameric Escherichia coli UvrD Helicase"
Biophysical Journal, 104(4):924-933, 2013 - Masayoshi Nishiyama, Yoshiyuki Sowa, Yoshifumi Kimura, Michio Homma, Akihiko Ishijima and Masahide Terazima.
"High Hydrostatic Pressure Induces Counterclockwise to Clockwise Reversals of the Escherichia coli Flagellar Motor."
Journal of Bacteriology, 8:1809-1814, 2013 - Takahiro Muraoka, Kota Adachi, Mihoko Ui, Shunichi Kawasaki, Nabanita Sadhukhan, Haruki Obara, Hidehito Tochio, Masahiro Shirakawa, and Kazushi Kinbara
"A structured monodisperse PEG for the effective suppression of protein aggregation"
Angewandte Chemie, 52:2430-2434, 2013 - Hidehito Tochio
"Watching protein structure at work in living cells using NMR spectroscopy"
Current Opinion in Chemical Biology, 16:609, 2012 - Yong-Woon Han, Tomoko Matsumoto, Hiroaki Yokota, Gengo Kashiwazaki, Hironobu Morinaga, Kaori Hashiya, Toshikazu Bando, Yoshie Harada and Hiroshi Sugiyama
"Binding of hairpin pyrrole and imidazole polyamides to DNA: relationship between torsion angle and association rate constants"
Nucleic Acids Research, 40(22):11510-11517, 2012 - Ryuji Igarashi, Yohsuke Yoshinari, Hiroaki Yokota, Takuma Sugi, Fuminori Sugihara, Kazuhiro Ikeda, Hitoshi Sumiya, Shigenori Tsuji, Ikue Mori, Hidehito Tochio, Yoshie Harada, and Masahiro Shirakawa
"Real-Time Background-Free Selective Imaging of Fluorescent Nanodiamonds in Vivo"
Nano Letters, 12:5726-5732, 2012 - Masaaki K. Sato, Takashi Ishihara, Hiroto Tanaka, Akihiko Ishijima and Yuichi Inoue
"Velocity-Dependent Actomyosin ATPase Cycle Revealed by In Vitro Motility Assay with Kinetic Analysis"
Biophysical Journal, 103:711-718, 2012 - Masayuki Endo, Koichi Tatsumi , Kosuke Terushima, Yousuke Katsuda, Kumi Hidaka , Yoshie Harada and Hiroshi Sugiyama
"Direct Visualization of the Movement of a Single T7 RNA Polymerase and Transcription on a DNA Nanostructure"
Angewandte Chemie International Edition, 51(35):8778-8782, 2012 - Kyohei Arita, Shin Isogai, Takashi Oda, Motoko Unoki, Kazuya Sugita, Naotaka Sekiyama, Keiko Kuwata, Ryuji Hamamoto, Hidehito Tochio, Mamoru Sato, Mariko Ariyoshi and Masahiro Shirakawa
"Recognition of modification status on a histone H3 tail by linked histone reader modules of the epigenetic regulator UHRF1."
Proc Natl Acad Sci USA, 109:12950-5, 2012 - Hidenori Ohnishi, Hidehito Tochio, Zenichiro Kato, Norio Kawamoto, Takeshi Kimura, Kazuo Kubota, Takahiro Yamamoto, Tatsuyoshi Funasaka, Hiroshi Nakano, Richard W. Wong, Masahiro Shirakawa and Naomi Kondo
"TRAM Is Involved in IL-18 Signaling and Functions as a Sorting Adaptor for MyD88"
PLoS ONE, 7:e38423, 2012 - Masatoshi Nada, Hidenori Ohnishi, Hidehito Tochio, Zenichiro Kato, Takeshi Kimura,
Kazuo Kubota, Takahiro Yamamoto, Yuji O. Kamatari, Naotaka Tsutsumi, Masahiro Shirakawa and Naomi Kondo
""Molecular analysis of the binding mode of Toll/interleukin-1 receptor (TIR) domain proteins during TLR2 signaling"
Molecular Immunology, 52:108-116, 2012 - Naotaka Sekiyama, JunGoo Jee, Shin Isogai, Ken-ichi Akagi, Tai-huang Huang, Mariko Ariyoshi, Hidehito Tochio and Masahiro Shirakawa
"NMR analysis of Lys63-linked polyubiquitin recognition by the tandem ubiquitin-interacting motifs of Rap80"
Journal of Biomolecular NMR, 52:339-350, 2012 - Naoki Inomata, Masaya Toda, Masaaki Sato, Akihiko Ishijima, and Takahito Ono
"Pico calorimeter for detection of heat produced in an individual brown fat cell."
Appl. Phys. Lett., 100:154104, 2012 - Katsunori Yogo, Taisaku Ogawa, Masahito Hayashi, Yoshie Harada, Takayuki Nishizaka and Kazuhiko Kinosita Jr
"Direct observation of strand passage by DNA-topoisomerase and its micrometre processivity"
PLoS One, 7(4):e34920, 2012 - Hisatsugu Yamada, Keigo Mizusawa, Ryuji Igarashi, Hidehito Tochio, Masahiro Shirakawa, Yasuhiko Tabata, Yu Kimura, Teruyuki Kondo, Yasuhiro Aoyama and Shinsuke Sando
"Substrate/Product-targeted NMR monitoring of pyrimidine catabolism and its inhibition by a clinical drug"
ACS Chemical Biology, 7:535-542, 2012 - Kohki Okabe, Noriko Inada, Chie Gota, Yoshie Harada, Takashi Funatsu and Seiichi Uchiyama
"Intracellular temperature mapping with a fluorescent polymeric thermometer and fluorescence lifetime imaging microscopy"
Nature Communications, 3:705, 2012 - Hajime Fukuoka, Yuichi Inoue, Akihiko Ishijima.
"Coordinated regulation of multiple flagellar motors by the Escherichia coli chemotaxis system."
BIOPHYSICS, 8:59-66, 2012 - Matthew A. B. Baker, Yuichi Inoue, Kuniaki Takeda, Akihiko Ishijima and Richard M. Berry
"Two methods of temperature control for single-molecule measurements"
European Biophysics Journal, 5:651-660, 2011 - Shun Terasawa, Hajime Fukuoka, Yuichi Inoue, Takashi Sagawa, Hiroto Takahashi and Akihiko Ishijima
"Coordinated reversal of flagellar motors on a single Escherichia coli."
Biophys. J., 100(9):2193-2200, 2011
A02-2 Maejima-Team
- Ryosuke Imai, Seiji Komeda, Mari Shimura, Sachiko Tamura1, Satoshi Matsuyama, Kohei Nishimura, Ryan Rogge, Akihiro Matsunaga, Ichiro Hiratani, Hideaki Takata, Masako Uemura, Yutaka Iida, Yuko Yoshikawa, Jeffrey C. Hansen, Kazuto Yamauchi, Masato T. Kanemaki and Kazuhiro Maeshima
"Chromatin folding and DNA replication inhibition mediated by a highly antitumor-active tetrazolato-bridged dinuclear platinum(II) complex."
Scientific Reports, 6:24712, 2016 - Kazuhiro Maeshima, Ryan Rogge, Sachiko Tamura, Yasumasa Joti, Takaaki Hikima, Heather Szerlong, Christine Krause, Jake Herman, Jennifer DeLuca, Tetsuya Ishikawa and Jeffrey C. Hansen
"Nucleosomal arrays self-assemble into supramolecular globular structures lacking 30-nm fibers."
EMBO J., 2016 - Kazuhiro Maeshima, Satoru Ide, Kayo Hibino, Masaki Sasai
"Liquid-like behavior of chromatin."
Current Opinion in Genetics and Development., 37:36-45, 2016 - Ogheneochukome Lolodi, Hiroya Yamazaki, Shotaro Otsuka, Masahiro Kumeta and Shige H. Yoshimura
"Dissecting in vivo steady-state dynamics of karyopherin-dependent nuclear transport"
Mol. Biol. Cell, 27:167-176, 2016 - Zhangyi Liang, Denise Zickler, Mara Prentiss, Frederick S. Chang, Guillaume Witz, Kazuhiro Maeshima and Nancy Kleckner
"Chromosomes progress to metaphase in multiple discrete steps via global compaction/expansion (stress) cycles."
Cell, 161:1124-1137., 2015 - Yusuke Kawamoto, Asuka Sasaki, Kaori Hashiya, Satoru Ide, Toshikazu Bando, Kazuhiro Maeshima and Hiroshi Sugiyama
"Tandem trimer pyrrole-imidazole polyamide probes targeting 18 base pairs in human telomere sequences"
Chemical Science, 6:2307-2312, 2015 - Kazuhiro Maeshima, Kazunari Kaizu, Sachiko Tamura, Tadasu Nozak, Tetsuro Kokubo, and Koichi Takahashi
"The physical size of transcription factors is key to transcriptional regulation in the chromatin domains."
Journal of Physics: condensed matters, 27:064116 (10 pp), 2015 - Kazuhiro Maeshima, Ryosuke Imai, Takaaki Hikima, and Yasumasa Joti
"Chromatin Structures Revealed by Small-angle X-ray Scattering Analysis and Computational Modeling."
Methods, 70:154-161, 2014 - Kazuhiro Maeshima, Yoshinori Nishino, and Yasumosa Joti
"Irregular organization in the human chromosomes revealed by X-ray scattering."
SPring-8 Research Frontiers 2013, 32-33, 2014 - Akiyoshi Hirata, Kiyoshi Nokihara, Yusuke Kawamoto, Toshikazu Bando, Asuka Sasaki, Satoru Ide, Kazuhiro Maeshima, Takeshi Kasama, and Hiroshi Sugiyama
"Evaluation of Tandem Hairpin Pyrrole-Imidazole Polyamides Recognizing Human Telomeres."
Journal of the American Chemical Society, 136:11546-11554, 2014 - Kazuhiro Maeshima, Tomoko Funakoshi, and Naoko Imamoto
"Cell-fusion method to visualize interphase nuclear pore (NPC) formation."
Methods in Cell Biology, 122:239-254, 2014 - Tadasu Nozaki, Ryosuke Imai, Sachiko Tamura, and Kazuhiro Maeshima
"Single nucleosome imaging in living human cells (Technical note)"
Cytologia, 79:41641, 2014 - Kazuhiro Maeshima, Ryosuke Imai, Sachiko Tamura and Tadasu Nozaki
"Chromatin as dynamic 10-nm fibers."
Chromosoma, 123:225-237, 2014 - Takahisa Kuga, Hua Nie, Takahiro Kazami, Mamoru Satoh, Kazuyuki Matsushita, Fumio Nomura, Kazuhiro Maeshima, Yuji Nakayama, Takeshi Tomonaga
"Lamin B2 prevents chromosome instability by ensuring proper mitotic chromosome segregation."
Oncogenesis, -:e95, 2014 - Yusuke Kawamoto, Toshikazu Bando, Fukumi Kamada, Yue Li, Kaori Hashiya, Kazuhiro Maeshima, and Hiroshi Sugiyama
"Development of a New Method for Synthesis of Tandem Hairpin Pyrrole–Imidazole Polyamide Probes Targeting Human Telomeres."
Journal of the American Chemical Society, 135:16468-16477, 2013 - Hideaki Takata, Tomo Hanafusa, Toshiaki Mori, Mari Shimura, Yutaka Iida, Kenichi Ishikawa, Kenichi Yoshikawa, Yuko Yoshikawa, and Kazuhiro Maeshima.
"Chromatin compaction protects genomic DNA from radiation damage."
PLOS ONE, 8:e75622, 2013 - Tadasu Nozaki, Kazunari Kaizu, Chan-Gi Pack, Sachiko Tamura, Tomomi Tani, Saera Hihara, Takeharu Nagai, Koichi Takahashi, and Kazuhiro Maeshima
"Flexible and dynamic nucleosome fiber in living mammalian cells."
Nucleus, 4:349 - 356, 2013 - Shige H. Yoshimura, Shotaro Otsuka, Masahiro Kumeta, Mariko Taga and Kunio Takeyasu
"Intermolecular disulfide bonds among nucleoporins regulate karyopherin-dependent nuclear transport."
J. Cell Sci., 126(Pt 14):3141-50, 2013 - Wei-Hao Shang, Tetsuya Hori, Nuno M.C. Martins, Atsushi Toyoda, Sadahiko Misu, Norikazu Monma, Ichiro Hiratani, Kazuhiro Maeshima, Kazuho Ikeo, Asao Fujiyama, Hiroshi Kimura, William C. Earnshaw, Tatsuo Fukagawa
"Chromosome Engineering Allows the Efficient Isolation of Vertebrate Neocentromeres."
Dev Cell, 24:635-648, 2013 - Hideaki Takata, Sachihiro Matsunaga, and Kazuhiro Maeshima
"The organisation of genomic DNA in mitotic chromosomes: a novel view."
Plant Genome Diversity, 2:33-34, 2013 - Saera Hihara, Chan-Gi Pack, Kazunari Kaizu, Tomomi Tani, Tomo Hanafusa, Tadasu Nozaki, Satoko Takemoto, Tomohiko Yoshimi, Hideo Yokota, Naoko Imamoto, Yasushi Sako, Masataka Kinjo, Koichi Takahashi, Takeharu Nagai, and Kazuhiro Maeshima
"Local Nucleosome Dynamics Facilitate Chromatin Accessibility in Living Mammalian Cells."
Cell Reports, 2:1645-1656., 2012 - Yasumasa Joti, Takaaki Hikima, Yoshinori Nishino, Fukumi Kamda, Saera
Hihara, Hideaki Takata, Tetsuya Ishikawa, and Kazuhiro Maeshima
"Chromosomes without a 30-nm chromatin fibre."
Nucleus, 3(5):404-10, 2012 - Shige H. Yoshimura, Shabaz Khan, Satoshi Ohno, Takashi Yokogawa, Kazuya Nishikawa, Takamitsu Hosoya, Hiroyuki Maruyama, Yoshikazu Nakayama and Kunio Takeyasu
"Site-specific attachment of a protein to the end of carbon nanotube without loss of protein function."
Bioconj. Chem., 23:1488-1493, 2012 - Yoshinori Nishino, Mikhail Eltsov, Yasumasa Joti, Kazuki Ito, Hideaki Takata, Yukio Takahashi, Saera Hihara, Achilleas S Frangakis, Naoko Imamoto, Tetsuya Ishikawa and Kazuhiro Maeshima
"Human mitotic chromosomes consist predominantly of irregularly folded nucleosome fibres without a 30-nm chromatin structure."
EMBO Journal, 31:1644-53, 2012 - Hideaki Takata, Hitoshi Nishijima, Kazuhiro Maeshima, and Kei-ichi Shibahara
"The integrator complex is required for the integrity of Cajal bodies"
Journal of Cell Science, 125:166-75, 2012 - Kazuhiro Maeshima, Haruki Iino, Saera Hihara and Naoko Imamoto
"Nuclear Size, Nuclear Pore Number, and Cell Cycle."
Nucleus, 2(2):113-118, 2011 - Hideaki Takata and Kazuhiro Maeshima
"Irregular folding of nucleosomes in the cell (Comment)."
Phys. Life Rev., 8(1):51-52, 2011 - Kazuhiro Maeshima, Saera Hihara and Hideaki Takata
"New insight into the mitotic chromosome structure : irregular folding of nucleosome fibres?"
Cold Spring Harbor Symposia on Quantitative Biology, 75:439-444, 2011
A02-3 Ueda-Team
- Fumiya Tatsuki, Genshiro A. Sunagawa, Shoi Shi, Etsuo A. Susaki, Hiroko Yukinaga, Dimitri Perrin, Kenta Sumiyama, Maki Ukai-Tadenuma, Hiroshi Fujishima, Rei-ichiro Ohno, Daisuke Tone, Koji L. Ode, Katsuhiko Matsumoto and Hiroki R. Ueda
"Involvement of Ca2+-dependent hyperpolarization in sleep duration in mammals"
Neuron, in press - Genshiro A. Sunagawa, Kenta Sumiyama, Maki Ukai-Tadenuma, Dimitri Perrin, Hiroshi Fujishima, Hideki Ukai, Osamu Nishimura, Shoi Shi, Rei-ichiro Ohno, Ryohei Narumi, Yoshihiro Shimizu, Daisuke Tone, Koji L. Ode, Shigehiro Kuraku and Hiroki R. Ueda
"Mammalian Reverse Genetics without Crossing Reveals Nr3a as a Short-Sleeper Gene"
Cell Reports, 14:662-677, 2016 - Etsuo A. Susaki and Hiroki R. Ueda
"Whole-body and Whole-Organ Clearing and Imaging Techniques with Single-Cell Resolution: Toward Organism-Level Systems Biology in Mammals"
Cell Chemical Biology, 23:137-157, 2016 - Etsuo A. Susaki, Kazuki Tainaka, Dimitri Perrin, Hiroko Yukinaga, Akihiro Kuno and Hiroki R. Ueda
"Advanced CUBIC protocols for whole-brain and whole-body clearing and imaging"
Nature protocols, 10:1709-1727, 2015 - Craig C. Jolley, Maki Ukai-Tadenuma, Dimitri Perrin and Hiroki R. Ueda
"A mammalian circadian clock model incorporating daytime expression elements"
Biophysical Journal, 107:1462-1473, 2014 - Kazuki Tainaka, Shimpei I. Kubota, Takeru Q. Suyama, Etsuo A. Susaki1, Dimitri Perrin, Maki Ukai-Tadenuma, Hideki Ukai and Hiroki R. Ueda
"Whole-Body Imaging with Single-Cell Resolution by Tissue Decolorization"
Cell, 159:911-924, 2014 - Etsuo A. Susaki, Kazuki Tainaka, Dimitri Perrin, Fumiaki Kishino, Takehiro Tawara, Tomonobu M. Watanabe, Chihiro Yokoyama, Hirotaka Onoe, Megumi Eguchi, Shun Yamaguchi, Takaya Abe, Hiroshi Kiyonari, Yoshihiro Shimizu, Atsushi Miyawaki, Hideo Yokota and Hiroki R. Ueda
"Whole-brain imaging with single-cell resolution using chemical cocktails and computational analysis"
Cell, 157:726-739, 2014 - Shuji Ikeda, Kazuki Tainaka, Katsuhiko Matsumoto, Yuta Shinohara, Koji L. Ode, Etsuo A. Susaki and Hiroki R. Ueda
"Non-Enzymatic DNA Cleavage Reaction Induced by 5-Ethynyluracil in Methylamine Aqueous Solution and Application to DNA Concatenation"
PLOS ONE, 9:e92369, 2014 - Yoichi Minami, Koji L. Ode and Hiroki R. Ueda
"Mammalian Circadian Clock: The Roles of Transcriptional Repression and Delay"
Handbook of Experimental Pharmacology, 217:359-377, 2013 - Craig C. Jolley, Koji L. Ode, and Hiroki R. Ueda
"A Design Principle for a Posttranslational Biochemical Oscillator"
Cell reports, 2:938-950, 2012 - Maki Ukai-Tadenuma, Rikuhiro G. Yamada, Haiyan Xu, Jürgen A. Ripperger, Andrew C. Liu and Hiroki R. Ueda
"Delay in feedback repression by cryptochrome 1 is required for circadian clock function."
Cell, 144(2):268-281, 2011