Nobuhiko Kato, Akihiko Ishijima, Takehiko Inaba, Fumimasa Nomura, Shuichi Takeda and Kingo Takiguchi "Effects of Lipid Composition and Solution Conditions on the Mechanical Properties of Membrane Vesicles" Membranes, 5:22-47, 2015
Yuichi Inoue, Mitsunori Nagata, Hiroshi Matsutaka, Takeru Okada, Masaaki K. Sato, and Akihiko Ishijima "Single Carbon Nanotube-Based Reversible Regulation of Biological Motor Activity" ACSnano, 9:3677-3684, 2015
Masaaki K. Sato,Masaya Toda,Naoki Inomata,Hisataka Maruyama,Yuko Okamatsu-Ogura,Fumihito Arai,Takahito Ono, Akihiko Ishijima and Yuichi Inoue "Temperature Changes in Brown Adipocytes Detected with a Bimaterial Microcantilever" Biophysical Journal, 106:2458–2464, 2014
Erik Walinda, Daichi Morimoto, Kenji Sugase, Tsuyoshi Konuma, Hidehito Tochio and Masahiro Shirakawa "Solution structure of the ubiquitin-associated (UBA) domain of human autophagy receptor NBR1 and its interaction with ubiquitin and polyubiquitin." The Journal of biological chemistry, 289:13890-902, 2014
Hajime Fukuoka, Takashi Sagawa, Yuichi Inoue, Hiroto Takahashi, and Akihiko Ishijima "Direct Imaging of Intracellular Signaling Components That Regulate Bacterial Chemotaxis." Science Signaling, 319:ra32, 2014
Yong-Woon Han, Yasuo Tsunaka, Hiroaki Yokota, Tomoko Matsumoto, GengoKashiwazaki, Hironobu Morinaga, Kaori Hashiya, Toshikazu Bando, Hiroshi Sugiyama and Yoshie Harada "Construction and Characterization of Cy3- or Cy5-Conjugated Hairpin Pyrrole/Imidazole Polyamides binding to DNA in the Nucleosome." Biomaterials Science, 2014, 2:297-307, 2014
Yoshiyuki Sowa, Michio Homma, Akihiko Ishijima, and Richard M. Berry. "Hybrid-fuel bacterial flagellar motors in Escherichia coli." Proc Natl Acad Sci U S A, 111:3436-41, 2014
Yohsuke Yoshinari, Ziya Kalay, and Yoshie Harada "Observing the rotational diffusion of nanodiamonds with arbitrary nitrogen vacancy center configurations." Phys. Rev. B, 88:235206, 2013
Yong-Woon Han, Gengo Kashiwazaki, Hironobu Morinaga, Tomoko Matsumoto, Kaori Hashiya, Toshikazu Bando, Yoshie Harada and Hiroshi Sugiyama "Effect of single Pyrrole replacement with balanine on DNA binding affinity and sequence specificity of hairpin Pyrrole/Imidazole Polyamides targeting 5´-GCGC-3´" Bioorganic & Medicinal Chemistry, 21(17):5436-5441, 2013
Taiichi Tsuyama, Jun-ichi Kishikawa, Yong-Woon Han, Yoshie Harada, Asako Tsubouchi, Hiroyuki Noji, Akira Kakizuka, Ken Yokoyama, Tadashi Uemura and Hiromi Imamura "In Vivo Fluorescent Adenosine 5′-Triphosphate (ATP) Imaging of Drosophila melanogaster and Caenorhabditis elegans by Using a Genetically Encoded Fluorescent ATP Biosensor Optimized for Low Temperatures" Analytical Chemistry, 85(16):7889-7896, 2013
Jens Danielsson, Kohsuke Inomata, Shuhei Murayama, Hidehito Tochio, Lisa Lang, Masahiro Shirakawa and Mikael Oliveberg "Pruning the ALS-Associated Protein SOD1 for in-Cell NMR" Journal of the American Chemical Society, 2013
Yousuke Takaoka, Yoshiyuki Kioi, Akira Morito, Junji Otani, Kyohei Arita, Eishi Ashihara, Mariko Ariyoshi, Hidehito Tochio, Masahiro Shirakawa and Itaru Hamachi "Quantitative comparison of protein dynamics in live cells and in vitro by in-cell (19)F-NMR" Chemical communications, 49:2801-2803, 2013
Ling Chin Hwang, Anthony G Vecchiarelli, Yong-Woon Han, Michiyo Mizuuchi, Yoshie Harada, Barbara E Funnell and Kiyoshi Mizuuchi "ParA-mediated plasmid partition driven by protein pattern self-organization" The EMBO Journal, 32:1238-1249, 2013
Hiroaki Yokota, Yuko Ayabe Chujo, and Yoshie Harada: "Single-Molecule Imaging of the Oligomer Formation of the Nonhexameric Escherichia coli UvrD Helicase" Biophysical Journal, 104(4):924-933, 2013
Masayoshi Nishiyama, Yoshiyuki Sowa, Yoshifumi Kimura, Michio Homma, Akihiko Ishijima and Masahide Terazima. "High Hydrostatic Pressure Induces Counterclockwise to Clockwise Reversals of the Escherichia coli Flagellar Motor." Journal of Bacteriology, 8:1809-1814, 2013
Takahiro Muraoka, Kota Adachi, Mihoko Ui, Shunichi Kawasaki, Nabanita Sadhukhan, Haruki Obara, Hidehito Tochio, Masahiro Shirakawa, and Kazushi Kinbara "A structured monodisperse PEG for the effective suppression of protein aggregation" Angewandte Chemie, 52:2430-2434, 2013
Hidehito Tochio "Watching protein structure at work in living cells using NMR spectroscopy" Current Opinion in Chemical Biology, 16:609, 2012
Yong-Woon Han, Tomoko Matsumoto, Hiroaki Yokota, Gengo Kashiwazaki, Hironobu Morinaga, Kaori Hashiya, Toshikazu Bando, Yoshie Harada and Hiroshi Sugiyama "Binding of hairpin pyrrole and imidazole polyamides to DNA: relationship between torsion angle and association rate constants" Nucleic Acids Research, 40(22):11510-11517, 2012
Masaaki K. Sato, Takashi Ishihara, Hiroto Tanaka, Akihiko Ishijima and Yuichi Inoue "Velocity-Dependent Actomyosin ATPase Cycle Revealed by In Vitro Motility Assay with Kinetic Analysis" Biophysical Journal, 103:711-718, 2012
Masayuki Endo, Koichi Tatsumi , Kosuke Terushima, Yousuke Katsuda, Kumi Hidaka , Yoshie Harada and Hiroshi Sugiyama "Direct Visualization of the Movement of a Single T7 RNA Polymerase and Transcription on a DNA Nanostructure" Angewandte Chemie International Edition, 51(35):8778-8782, 2012
Kyohei Arita, Shin Isogai, Takashi Oda, Motoko Unoki, Kazuya Sugita, Naotaka Sekiyama, Keiko Kuwata, Ryuji Hamamoto, Hidehito Tochio, Mamoru Sato, Mariko Ariyoshi and Masahiro Shirakawa "Recognition of modification status on a histone H3 tail by linked histone reader modules of the epigenetic regulator UHRF1." Proc Natl Acad Sci USA, 109:12950-5, 2012
Hidenori Ohnishi, Hidehito Tochio, Zenichiro Kato, Norio Kawamoto, Takeshi Kimura, Kazuo Kubota, Takahiro Yamamoto, Tatsuyoshi Funasaka, Hiroshi Nakano, Richard W. Wong, Masahiro Shirakawa and Naomi Kondo "TRAM Is Involved in IL-18 Signaling and Functions as a Sorting Adaptor for MyD88" PLoS ONE, 7:e38423, 2012
Masatoshi Nada, Hidenori Ohnishi, Hidehito Tochio, Zenichiro Kato, Takeshi Kimura,
Kazuo Kubota, Takahiro Yamamoto, Yuji O. Kamatari, Naotaka Tsutsumi, Masahiro Shirakawa and Naomi Kondo ""Molecular analysis of the binding mode of Toll/interleukin-1 receptor (TIR) domain proteins during TLR2 signaling" Molecular Immunology, 52:108-116, 2012
Naotaka Sekiyama, JunGoo Jee, Shin Isogai, Ken-ichi Akagi, Tai-huang Huang, Mariko Ariyoshi, Hidehito Tochio and Masahiro Shirakawa "NMR analysis of Lys63-linked polyubiquitin recognition by the tandem ubiquitin-interacting motifs of Rap80" Journal of Biomolecular NMR, 52:339-350, 2012
Naoki Inomata, Masaya Toda, Masaaki Sato, Akihiko Ishijima, and Takahito Ono "Pico calorimeter for detection of heat produced in an individual brown fat cell." Appl. Phys. Lett., 100:154104, 2012
Katsunori Yogo, Taisaku Ogawa, Masahito Hayashi, Yoshie Harada, Takayuki Nishizaka and Kazuhiko Kinosita Jr "Direct observation of strand passage by DNA-topoisomerase and its micrometre processivity" PLoS One, 7(4):e34920, 2012
Hisatsugu Yamada, Keigo Mizusawa, Ryuji Igarashi, Hidehito Tochio, Masahiro Shirakawa, Yasuhiko Tabata, Yu Kimura, Teruyuki Kondo, Yasuhiro Aoyama and Shinsuke Sando "Substrate/Product-targeted NMR monitoring of pyrimidine catabolism and its inhibition by a clinical drug" ACS Chemical Biology, 7:535-542, 2012
Kohki Okabe, Noriko Inada, Chie Gota, Yoshie Harada, Takashi Funatsu and Seiichi Uchiyama "Intracellular temperature mapping with a fluorescent polymeric thermometer and fluorescence lifetime imaging microscopy" Nature Communications, 3:705, 2012
Hajime Fukuoka, Yuichi Inoue, Akihiko Ishijima. "Coordinated regulation of multiple flagellar motors by the Escherichia coli chemotaxis system." BIOPHYSICS, 8:59-66, 2012
Matthew A. B. Baker, Yuichi Inoue, Kuniaki Takeda, Akihiko Ishijima and Richard M. Berry "Two methods of temperature control for single-molecule measurements" European Biophysics Journal, 5:651-660, 2011
Shun Terasawa, Hajime Fukuoka, Yuichi Inoue, Takashi Sagawa, Hiroto Takahashi and Akihiko Ishijima
"Coordinated reversal of flagellar motors on a single Escherichia coli."
Biophys. J., 100(9):2193-2200, 2011
Ryosuke Imai, Seiji Komeda, Mari Shimura, Sachiko Tamura1, Satoshi Matsuyama, Kohei Nishimura, Ryan Rogge, Akihiro Matsunaga, Ichiro Hiratani, Hideaki Takata, Masako Uemura, Yutaka Iida, Yuko Yoshikawa, Jeffrey C. Hansen, Kazuto Yamauchi, Masato T. Kanemaki and Kazuhiro Maeshima "Chromatin folding and DNA replication inhibition mediated by a highly antitumor-active tetrazolato-bridged dinuclear platinum(II) complex." Scientific Reports, 6:24712, 2016
Kazuhiro Maeshima, Ryan Rogge, Sachiko Tamura, Yasumasa Joti, Takaaki Hikima, Heather Szerlong, Christine Krause, Jake Herman, Jennifer DeLuca, Tetsuya Ishikawa and Jeffrey C. Hansen "Nucleosomal arrays self-assemble into supramolecular globular structures lacking 30-nm fibers." EMBO J., 2016
Kazuhiro Maeshima, Satoru Ide, Kayo Hibino, Masaki Sasai "Liquid-like behavior of chromatin." Current Opinion in Genetics and Development., 37:36-45, 2016
Ogheneochukome Lolodi, Hiroya Yamazaki, Shotaro Otsuka, Masahiro Kumeta and Shige H. Yoshimura "Dissecting in vivo steady-state dynamics of karyopherin-dependent nuclear transport" Mol. Biol. Cell, 27:167-176, 2016
Zhangyi Liang, Denise Zickler, Mara Prentiss, Frederick S. Chang, Guillaume Witz, Kazuhiro Maeshima and Nancy Kleckner "Chromosomes progress to metaphase in multiple discrete steps via global compaction/expansion (stress) cycles." Cell, 161:1124-1137., 2015
Yusuke Kawamoto, Asuka Sasaki, Kaori Hashiya, Satoru Ide, Toshikazu Bando, Kazuhiro Maeshima and Hiroshi Sugiyama "Tandem trimer pyrrole-imidazole polyamide probes targeting 18 base pairs in human telomere sequences" Chemical Science, 6:2307-2312, 2015
Kazuhiro Maeshima, Kazunari Kaizu, Sachiko Tamura, Tadasu Nozak, Tetsuro Kokubo, and Koichi Takahashi "The physical size of transcription factors is key to transcriptional regulation in the chromatin domains." Journal of Physics: condensed matters, 27:064116 (10 pp), 2015
Kazuhiro Maeshima, Ryosuke Imai, Takaaki Hikima, and Yasumasa Joti "Chromatin Structures Revealed by Small-angle X-ray Scattering Analysis and Computational Modeling." Methods, 70:154-161, 2014
Kazuhiro Maeshima, Yoshinori Nishino, and Yasumosa Joti "Irregular organization in the human chromosomes revealed by X-ray scattering." SPring-8 Research Frontiers 2013, 32-33, 2014
Akiyoshi Hirata, Kiyoshi Nokihara, Yusuke Kawamoto, Toshikazu Bando, Asuka Sasaki, Satoru Ide, Kazuhiro Maeshima, Takeshi Kasama, and Hiroshi Sugiyama "Evaluation of Tandem Hairpin Pyrrole-Imidazole Polyamides Recognizing Human Telomeres." Journal of the American Chemical Society, 136:11546-11554, 2014
Kazuhiro Maeshima, Tomoko Funakoshi, and Naoko Imamoto "Cell-fusion method to visualize interphase nuclear pore (NPC) formation." Methods in Cell Biology, 122:239-254, 2014
Tadasu Nozaki, Ryosuke Imai, Sachiko Tamura, and Kazuhiro Maeshima "Single nucleosome imaging in living human cells (Technical note)" Cytologia, 79:41641, 2014
Kazuhiro Maeshima, Ryosuke Imai, Sachiko Tamura and Tadasu Nozaki "Chromatin as dynamic 10-nm fibers." Chromosoma, 123:225-237, 2014
Yusuke Kawamoto, Toshikazu Bando, Fukumi Kamada, Yue Li, Kaori Hashiya, Kazuhiro Maeshima, and Hiroshi Sugiyama "Development of a New Method for Synthesis of Tandem Hairpin Pyrrole–Imidazole Polyamide Probes Targeting Human Telomeres." Journal of the American Chemical Society, 135:16468-16477, 2013
Hideaki Takata, Tomo Hanafusa, Toshiaki Mori, Mari Shimura, Yutaka Iida, Kenichi Ishikawa, Kenichi Yoshikawa, Yuko Yoshikawa, and Kazuhiro Maeshima. "Chromatin compaction protects genomic DNA from radiation damage." PLOS ONE, 8:e75622, 2013
Tadasu Nozaki, Kazunari Kaizu, Chan-Gi Pack, Sachiko Tamura, Tomomi Tani, Saera Hihara, Takeharu Nagai, Koichi Takahashi, and Kazuhiro Maeshima "Flexible and dynamic nucleosome fiber in living mammalian cells." Nucleus, 4:349 - 356, 2013
前島一博 "放射光によるヒト染色体の構造解析" 放射光, 26:206-213, 2013
Shige H. Yoshimura, Shotaro Otsuka, Masahiro Kumeta, Mariko Taga and Kunio Takeyasu "Intermolecular disulfide bonds among nucleoporins regulate karyopherin-dependent nuclear transport." J. Cell Sci., 126(Pt 14):3141-50, 2013
Wei-Hao Shang, Tetsuya Hori, Nuno M.C. Martins, Atsushi Toyoda, Sadahiko Misu, Norikazu Monma, Ichiro Hiratani, Kazuhiro Maeshima, Kazuho Ikeo, Asao Fujiyama, Hiroshi Kimura, William C. Earnshaw, Tatsuo Fukagawa "Chromosome Engineering Allows the Efficient Isolation of Vertebrate Neocentromeres." Dev Cell, 24:635-648, 2013
Hideaki Takata, Sachihiro Matsunaga, and Kazuhiro Maeshima "The organisation of genomic DNA in mitotic chromosomes: a novel view." Plant Genome Diversity, 2:33-34, 2013
Yasumasa Joti, Takaaki Hikima, Yoshinori Nishino, Fukumi Kamda, Saera
Hihara, Hideaki Takata, Tetsuya Ishikawa, and Kazuhiro Maeshima "Chromosomes without a 30-nm chromatin fibre." Nucleus, 3(5):404-10, 2012
前島一博 "不規則な収納が生む自由" JT生命誌研究館「生命誌」, 73, 2012
Shige H. Yoshimura, Shabaz Khan, Satoshi Ohno, Takashi Yokogawa, Kazuya Nishikawa, Takamitsu Hosoya, Hiroyuki Maruyama, Yoshikazu Nakayama and Kunio Takeyasu "Site-specific attachment of a protein to the end of carbon nanotube without loss of protein function." Bioconj. Chem., 23:1488-1493, 2012
Yoshinori Nishino, Mikhail Eltsov, Yasumasa Joti, Kazuki Ito, Hideaki Takata, Yukio Takahashi, Saera Hihara, Achilleas S Frangakis, Naoko Imamoto, Tetsuya Ishikawa and Kazuhiro Maeshima "Human mitotic chromosomes consist predominantly of irregularly folded nucleosome fibres without a 30-nm chromatin structure." EMBO Journal, 31:1644-53, 2012
Hideaki Takata, Hitoshi Nishijima, Kazuhiro Maeshima, and Kei-ichi Shibahara "The integrator complex is required for the integrity of Cajal bodies" Journal of Cell Science, 125:166-75, 2012
Kazuhiro Maeshima, Haruki Iino, Saera Hihara and Naoko Imamoto
"Nuclear Size, Nuclear Pore Number, and Cell Cycle."
Nucleus, 2(2):113-118, 2011
Hideaki Takata and Kazuhiro Maeshima
"Irregular folding of nucleosomes in the cell (Comment)."
Phys. Life Rev., 8(1):51-52, 2011
Kazuhiro Maeshima, Saera Hihara and Hideaki Takata
"New insight into the mitotic chromosome structure : irregular folding of nucleosome fibres?"
Cold Spring Harbor Symposia on Quantitative Biology, 75:439-444, 2011
Fumiya Tatsuki, Genshiro A. Sunagawa, Shoi Shi, Etsuo A. Susaki, Hiroko Yukinaga, Dimitri Perrin, Kenta Sumiyama, Maki Ukai-Tadenuma, Hiroshi Fujishima, Rei-ichiro Ohno, Daisuke Tone, Koji L. Ode, Katsuhiko Matsumoto and Hiroki R. Ueda "Involvement of Ca2+-dependent hyperpolarization in sleep duration in mammals" Neuron, in press
Genshiro A. Sunagawa, Kenta Sumiyama, Maki Ukai-Tadenuma, Dimitri Perrin, Hiroshi Fujishima, Hideki Ukai, Osamu Nishimura, Shoi Shi, Rei-ichiro Ohno, Ryohei Narumi, Yoshihiro Shimizu, Daisuke Tone, Koji L. Ode, Shigehiro Kuraku and Hiroki R. Ueda "Mammalian Reverse Genetics without Crossing Reveals Nr3a as a Short-Sleeper Gene" Cell Reports, 14:662-677, 2016
Etsuo A. Susaki and Hiroki R. Ueda "Whole-body and Whole-Organ Clearing and Imaging Techniques with Single-Cell Resolution: Toward Organism-Level Systems Biology in Mammals" Cell Chemical Biology, 23:137-157, 2016
Etsuo A. Susaki, Kazuki Tainaka, Dimitri Perrin, Hiroko Yukinaga, Akihiro Kuno and Hiroki R. Ueda "Advanced CUBIC protocols for whole-brain and whole-body clearing and imaging" Nature protocols, 10:1709-1727, 2015
Craig C. Jolley, Maki Ukai-Tadenuma, Dimitri Perrin and Hiroki R. Ueda "A mammalian circadian clock model incorporating daytime expression elements" Biophysical Journal, 107:1462-1473, 2014
Kazuki Tainaka, Shimpei I. Kubota, Takeru Q. Suyama, Etsuo A. Susaki1, Dimitri Perrin, Maki Ukai-Tadenuma, Hideki Ukai and Hiroki R. Ueda "Whole-Body Imaging with Single-Cell Resolution by Tissue Decolorization" Cell, 159:911-924, 2014
Etsuo A. Susaki, Kazuki Tainaka, Dimitri Perrin, Fumiaki Kishino, Takehiro Tawara, Tomonobu M. Watanabe, Chihiro Yokoyama, Hirotaka Onoe, Megumi Eguchi, Shun Yamaguchi, Takaya Abe, Hiroshi Kiyonari, Yoshihiro Shimizu, Atsushi Miyawaki, Hideo Yokota and Hiroki R. Ueda "Whole-brain imaging with single-cell resolution using chemical cocktails and computational analysis" Cell, 157:726-739, 2014
Shuji Ikeda, Kazuki Tainaka, Katsuhiko Matsumoto, Yuta Shinohara, Koji L. Ode, Etsuo A. Susaki and Hiroki R. Ueda "Non-Enzymatic DNA Cleavage Reaction Induced by 5-Ethynyluracil in Methylamine Aqueous Solution and Application to DNA Concatenation" PLOS ONE, 9:e92369, 2014
Yoichi Minami, Koji L. Ode and Hiroki R. Ueda "Mammalian Circadian Clock: The Roles of Transcriptional Repression and Delay" Handbook of Experimental Pharmacology, 217:359-377, 2013
Craig C. Jolley, Koji L. Ode, and Hiroki R. Ueda "A Design Principle for a Posttranslational Biochemical Oscillator" Cell reports, 2:938-950, 2012
Maki Ukai-Tadenuma, Rikuhiro G. Yamada, Haiyan Xu, Jürgen A. Ripperger, Andrew C. Liu and Hiroki R. Ueda
"Delay in feedback repression by cryptochrome 1 is required for circadian clock function."
Cell, 144(2):268-281, 2011
Seiji Kojima "Dynamism and regulation of the stator, the energy conversion complex of the bacterial flagellar motor." Curr. Opin. Microbiol., 28:66-71, 2015
Eiji Ishii E, Shinobu Chiba, Narimasa Hashimoto, Seiji Kojima, Michio Homma, Koreaki Ito, Yoshinori Akiyama and Hiroyuki Mori "Nascent chain-monitored remodeling of the Sec machinery for salinity adaptation of marine bacteria." Proc Natl Acad Sci U S A., 112:E5513-E5522., 2015
Norihiro Takekawa, Masayoshi Nishiyama, Tsuyoshi Kaneseki, Tamotsu Kanai, Haruyuki Atomi, Seiji Kojima and Michio Homma "Sodium-driven energy conversion for the flagellar rotation of the earliest divergent hyperthermophilic bacterium." Sci. Rep., 5:12711; doi: 10.1038/srep12711., 2015
Shiwei Zhu, Ananthanarayanan Kumar, Seiji Kojima and Michio Homma "FliL associates with the stator to support torque generation of the sodium-driven polar flagellar motor of Vibrio." Mol. Microbiol., 98:101-110, 2015
Hiroki Ono, Akari Takashima, Hikaru Hirata, Michio Homma and Seiji Kojima "The MinD homolog FlhG regulates the synthesis of the single polar flagellum of Vibrio alginolyticus." Mol. Microbiol., 98:130-141, 2015
Yasuhiro Onoue, Seiji Kojima and Michio Homma "Effect of FliG three-amino-acids deletion in Vibrio polar-flagellar rotation and formation." J. Biochem., 158:523-529, 2015
Yuuki Nishino, Yasuhiro Onoue, Seiji Kojima and Michio Homma "Functional chimeras of flagellar stator proteins between E. coli MotB and Vibrio PomB at the periplasmic region in Vibrio or E. coli." MicrobiologyOpen, doi: 10.1002/mbo3.240:doi: 10.1002/mbo3.240, 2015
Ryo Ogawa, Rei Abe-Yoshizumi, Takaaki Kishi, Michio Homma and Seiji Kojima "Interaction of the C-terminal tail of FliF with FliG from the Na+-driven flagellar motor of Vibrio alginolyticus." J. Bacteriol., 197:63-72, 2015
Shiwei Zhu, Masato Takao, Na Li, Mayuko Sakuma, Yuuki Nishino, Michio Homma, Seiji Kojima and Imada K "Conformational change in the periplamic region of the flagellar stator coupled with the assembly around the rotor." Proc. Natl. Acad. Sci. U. S. A., 111:13523-13528, 2014
宮崎牧人、石渡信一 "In vitro再構成による収縮環の形成機構の解明" 生物物理, in press, 2016
Kotaro Oyama, Tomomi Arai, Akira Isaka, Taku Sekiguchi, Hideki Itoh, Yusuke Seto, Makito Miyazaki, Takeshi Itabashi, Takashi Ohki, Madoka Suzuki and Shin'ichi Ishiwata "Directional bleb formation in spherical cells under temperature gradient" Biophysical Journal, 109:355-364, 2015
Makito Miyazaki, Masataka Chiba, Hiroki Eguchi, Takashi Ohki and Shin'ichi Ishiwata "Cell-sized spherical confinement induces the spontaneous formation of contractile actomyosin rings in vitro" Nature Cell Biology, 17:480-489, 2015
Masataka Chiba*, Makito Miyazaki* and Shin'ichi Ishiwata (*equal contribution) "Quantitative analysis of the lamellarity of giant liposomes prepared by the inverted emulsion method" Biophysical Journal, 107:346-354, 2014
Tohru Minamino, Miki Kinoshita, Yumi Inoue, Yusuke V. Morimoto, Kunio Ihara, Satomi Koya, Noritaka Hara, Noriko Nishioka, Seiji Kojima, Michio Homma and Keiichi Namba "FliH and FliI ensure efficient energy coupling of flagellar type III protein export in Salmonella" Microbiologyopen, 2016
Tohru Minamino, Yusuke V. Morimoto, Noritaka Hara, Phillip D. Aldridge and Keiichi Namba "The Bacterial Flagellar Type III Export Gate Complex Is a Dual Fuel Engine That Can Use Both H+ and Na+ for Flagellar Protein Export" PLOS Pathogens, 12:e1005495, 2016
Matthew A B Baker, Robert M G Hynson, Lorraine A Ganuelas, Nasim Shah Mohammadi, Chu Wai Liew, Anthony A Rey, Anthony P Duff, Andrew E Whitten, Cy M Jeffries, Nicolas J Delalez, Yusuke V Morimoto, Daniela Stock, Judith P Armitage, Andrew J Turberfield, Keiichi Namba, Richard M Berry and Lawrence K Lee "Domain-swap polymerization drives the self-assembly of the bacterial flagellar motor" Nature Structural & Molecular Biology, 23:197-203, 2016
Md. Shafiqul Islam, Yusuke V. Morimoto, Kudo Seishi and Shuichi Nakamura "H+ and Na+ are involved in flagellar rotation of the spirochete Leptospira" Biochemical and Biophysical Research Communications, 466:196-200, 2015
Shuichi Nakamura, Yusuke V Morimoto and Seishi Kudo "A lactose fermentation product produced by Lactococcus lactis subsp. lactis, acetate, inhibits the motility of flagellated pathogenic bacteria" Microbiology, 161:701-707, 2015
Tohru Minamino, Yusuke V. Morimoto, Miki Kinoshita, Phillip D. Aldridge and Keiichi Namba "The bacterial flagellar protein export apparatus processively transports flagellar proteins even with extremely infrequent ATP hydrolysis" Scientific Reports, 4:7579, 2014
#Fan Bai, #Yusuke V. Morimoto, Shinsuke D. J. Yoshimura, Noritaka Hara, Nobunori Kami-ike, Keiichi Namba and Tohru Minamino (#equal contribution) "Assembly dynamics and the roles of FliI ATPase of the bacterial flagellar export apparatus" Scientific Reports, 4:6528, 2014
Chinen T, Liu P, Shioda S, Pagel J, Cerikan B, Lin TC, Gruss O, Hayashi Y, Takeno H, Shima T, Okada Y, Hayakawa I, Hayashi Y, Kigoshi H, Usui T, Schiebel E "The γ-tubulin-specific inhibitor gatastatin reveals temporal requirements of microtubule nucleation during the cell cycle." Nature Communications, 6:8722, 2015
Ohyanagi T, Shima T, Okada Y, Tsukasaki Y, Komatsuzaki A, Tsuboi S, Jin T. "Compact and stable SNAP ligand-conjugated quantum dots as a fluorescent probe for single-molecule imaging of dynein motor protein." Chem Commun, 51:14836-9, 2015
Shinichi Hayashi and Yasushi Okada "Ultrafast superresolution fluorescence imaging with spinning disk confocal microscope optics" Molecular Biology of the Cell, 26:1743-51, 2015
Takai A, Nakano M, Saito K, Haruno R, Watanabe TM, Ohyanagi T, Jin T, *Okada Y, *Nagai T "Expanded palette of Nano-lanterns for real-time multicolor luminescence imaging." PNAS, 112:4352-6, 2015
Yasushi Okada and Shinichi Nakagawa "Super-Resolution Imaging of Nuclear Bodies by STED Microscopy in Nuclear Bodies and Noncoding RNAs" Methods in Molecular Biology, 1262:21-35, 2015
Kyoko Chiba, Masahiko Araseki, Keisuke Nozawa, Keiko Furukori, Yoichi Araki, Takahide Matsushima, Tadashi Nakaya, Saori Hata, Yuhki Saito, Seiichi Uchida, Yasushi Okada, Angus C. Nairn, Roger J. Davis, Tohru Yamamoto, Masataka Kinjo, Hidenori Taru, and Toshiharu Suzuki "Quantitative analysis of APP axonal transport in neurons: role of JIP1 in enhanced APP anterograde transport" Molecular Biology of the Cell, 25:3569-3580, 2014
岡田康志 "はじめての超解像イメージング" 実験医学, 32:2623-2629, 2014
岡田康志 "ゲノム編集革命" 現代化学, 2014年8月号:22-27, 2014
Shin-nosuke Uno, Mako Kamiya, Toshitada Yoshihara, Ko Sugawara, Kohki Okabe, Mehmet C. Tarhan, Hiroyuki Fujita, Takashi Funatsu, Yasushi Okada, Seiji Tobita and Yasuteru Urano "A spontaneously blinking fluorophore based on intramolecular spirocyclization for live-cell super-resolution imaging." Nature Chemistry, 6:681-689, 2014
Kim K, Yajima J, Oh Y, LeeW, Oowada S, Nishizaka T. and Kim D. "Super-resolution imaging of microtubular transport in vitro based on nanoscale localization sampling using nanoantenna arrays." Small, 786:p892-p900, 2012
Tatsuya Niwa, Takashi Kanamori, Takuya Ueda, and Hideki Taguchi "Global analysis of chaperone effects using a reconstituted cell-free translation system." Proceedings of the National Academy of Sciences of the United States of America, 109:8937-8942, 2012
Takeshi Tokunaga, Shigeyuki Namiki, Katsuhiro Yamada, Takahiro Imaishi, Hiroshi Nonaka, Kenzo Hirose and Shinsuke Sando "Cell Surface-Anchored Fluorescent Aptamer Sensor Enables Imaging of Chemical Transmitter Dynamics" JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 134:9561-9564, 2012
Norihiro Takekawa, Seiji Kojima and Michio Homma "Contribution of many charged residues at the stator-rotor interface of the Na+-driven flagellar motor to torque generation in Vibrio alginolyticus." Journal of Bacteriology, 155:1377-1385, 2014
Yasuhiro Onoue, Rei Abe-Yoshizumi, Mizuki Gohara, Shiori Kobayashi, Noriko Nishioka, Seiji Kojima and Michio Homma "Construction of functional fragments of the cytoplasmic loop with the C-terminal region of PomA, a stator component of the Vibrio Na+ driven flagellar motor." Journal of Biochemistry, 155:207-216, 2014
Mizuki Gohara, Shiori Kobayashi, Rei Abe-Yoshizumi, Natsumi Nonoyama, Seiji Kojima, Yasuo Asami and Michio Homma "Biophysical characterization of the C-terminal region of FliG, an essential rotor component of the Na+ driven flagellar motor." Journal of Biochemistry, 155:83-89, 2014
Shiwei Zhu, Seiji Kojima and Michio Homma "Structure, gene regulation and environmental response of flagella in Vibrio." Frontiers in Microbiology, 4:doi: 10.3389/fmicb.2013.00410, 2013
Hiroyuki Terashima, Takashi Terauchi, Kunio Ihara, Noriko Nishioka, Seiji Kojima and Michio Homma "Mutation in the a-subunit of F1FO-ATPase causes an increased motility phenotype through the sodium-driven flagella of Vibrio." Journal of Biochemistry, 154:177-184, 2013
Hiroyuki Terashima, Na Li, Mayuko Sakuma, Masafumi Koike, Seiji Kojima, Michio Homma and Katsumi Imada "Insight into the assembly mechanism in the supramolecular rings of the sodium-driven Vibrio flagellar motor from the structure of FlgT." Proc Natl Acad Sci USA, 110:6133-6138, 2013
Norihiro Takekawa, Seiji Kojima and Michio Homma "Fluorescence imaging of GFP-fused periplasmic components of Na+-driven flagellar motor using Tat pathway in Vibrio alginolyticus." Journal of Biochemistry, 153:547-553, 2013
Maya Kitaoka, Takehiko Nishigaki, Kunio Ihara, Noriko Nishioka, Seiji Kojima and Michio Homma "A novel dnaJ family gene, sflA, encodes an inhibitor of flagellation in marine Vibrio" Journal of Bacteriology, 195(4):816-22, 2013
Norihiro Takekawa, Takashi Terauchi, Yusuke V. Morimoto, Tohru Minamino, Chien-Jung Lo, Seiji Kojima and Michio Homma "Na+ conductivity of the Na+-driven flagellar motor complex composed of unplugged wild-type or mutant PomB with PomA." Journal of Biochemistry, 153:441-451, 2013
Rei Abe-Yoshizumi, Shiori Kobayashi, Mizuki Gohara, Kokoro Hayashi, Chojiro Kojima, Seiji Kojima, Yuki Sudo, Yasuo Asami and Michio Homma "Expression, purification and biochemical characterization of the cytoplasmic loop of PomA, a stator component of the Na+ driven flagellar motor." Biophysics, 9:21-29, 2013
Shiwei Zhu, Michio Homma and Seiji Kojima "Intragenic Suppressor of a Plug Deletion Nonmotility Mutation in PotB, a Chimeric Stator Protein of Sodium-Driven Flagella" Journal of Bacteriology, 194:6728-6735, 2012
Masayoshi Nishiyama and Seiji Kojima "Bacterial motility measured by a miniature chamber for high-pressure microscopy" International Journal of Molecular Sciences, 13:9225-9239, 2012
Kenichi Ohara, Masaru Kojima, Akira Fukushima, Shun Onozaki, Mitsuhiro Horade, Masumi Yamada, Minoru Seki, Yasushi Mae, Tatsuo Arai "Automated Construction System for 3D Lattice Structure Based on Alginate Gel Fiber Containing Living Cells" Journal of Robotics and Mechatronics, 25:665-672, 2013
Puwanan Chumtong, Masaru Kojima, Kenichi Ohara, Yasushi Mae, Mitsuhiro Horade, Yoshikatsu Akiyama, Masayuki Yamato, Tatsuo Arai "Design and Fabrication of Changeable Cell Culture Mold" Journal of Robotics and Mechatronics, 25:657-664, 2013
Masaru Kojima, Zhenhai Zhang, Masahiro Nakajima, Katsutoshi Ooe, Toshio Fukuda "Construction and evaluation of bacteria-driven liposome" Sensors and Actuators B, 183:395– 400, 2013
Masaru Takeuchi, Masahiro Nakajima, Masaru Kojima, Toshio Fukuda "Handling of micro objects using phase transition of thermoresponsive polymer" Journal of Micro-Bio Robotics, 8:53-64, 2013
Koh O. Nagata, Chieko Nakada, Rinshi S. Kasai, Akihiro Kusumi and Kazumitsu Ueda "ABCA1 dimer-monomer interconversion during HDL generation revealed by single-molecule imaging" Proceedings of the National Academy of Sciences of the United States of America, 110:5034-5039, 2013
Akihiro Kusumi, Takahiro K. Fujiwara, Rahul Chadda, Min Xie, Taka A. Tsunoyama, Ziya Kalay, Rinshi S. Kasai and Kenichi G.N. Suzuki "Dynamic organizing principles of the plasma membrane that regulate signal transduction: commemorating the fortieth anniversary of Singer and Nicolson's fluid-mosaic model" Annual Review of Cell and Developmental Biology, 28:215-250, 2012
Kenichi G.N. Suzuki, Rinshi S. Kasai, Koichiro M. Hirosawa, Yuri L. Nemoto, Munenori Ishibashi, Yoshihiro Miwa, Takahiro K. Fujiwara and Akihiro Kusumi "Transient GPI-anchored protein homodimers are units for raft organization and function" Nature Chemical Biology, 8:774-783, 2012
Kwang-jin Cho, Rinshi S. Kasai, Jin-Hee Park, Sravanthi Chigurupati, Sonja J. Heidorn, Dharini van der Hoeven, Sarah J. Plowman, Akihiro Kusumi, Richard Marais and John F. Hancock "Raf inhibitors target ras spatiotemporal dynamics" Current Biology, 22:945-955, 2012
Akihiro Kusumi, Takahiro K. Fujiwara, Nobuhiro Morone, Kenta J. Yoshida, Rahul Chadda, Min Xie, Rinshi S. Kasai, Kenichi G.N. Suzuki "Membrane mechanisms for signal transduction: the coupling of the meso-scale raft domains to membrane-skeleton-induced compartments and dynamic protein complexes" Seminars in Cell & Developmental Biology, 23:126-144, 2012
Emilie Louvet, Aiko Yoshida, Masahiro Kumeta and Kunio Takeyasu "Probing the stiffness of isolated nucleoli by atomic force microscopy" Histochemistry and Cell Biology, 141:365-381, 2014
Masahiro Kumeta, Jamie Gilmore, Hiroki Umeshima, Masaaki Ishikawa, Shinichiro Kitajiri, Tsuneyoshi Horigome, Mineko Kengaku and Kunio Takeyasu "Caprice/MISP is a novel F-actin bundling protein critical for actin-based cytoskeletal reorganizations" Genes to Cells, 19(4):338-49, 2014
Jamie Gilmore, Hideki Aizaki, Aiko Yoshida, Katashi Deguchi, Masahiro Kumeta, Julia Junghof, Takaji Wakita and Kunio Takeyasu "Nanoimaging of ssRNA: Genome architecture of the Hepatitis C virus revealed by atomic force microscopy" Journal of Nanomedicine & Nanotechnology, S5:10, 2014
Kouko Wada, Manae Sato, Nanase Araki, Masahiro Kumeta, Yuya Hirai, Kunio Takeyasu, Kazuhiro Furukawa and Tsuneyoshi Horigome "Dynamics of WD-repeat containing proteins in SSU processome components" Biochemistry and Cell Biology, 92(3):191-9, 2014
Manae Sato, Nanase Araki, Masahiro Kumeta, Kunio Takeyasu, Yusuke Taguchi, Takahiro Asai, Kazuhiro Furukawa and Tsuneyoshi Horigome "Interaction, mobility and phosphorylation of human orthologues of WD repeat-containing components of the yeast SSU processome t-UTP sub-complex" Biochemistry and Cell Biology, 91:466-475, 2013
Jamie Gilmore, Masahiro Kumeta and Kunio Takeyasu "AFM investigation of the organization of actin bundles formed by actin-binding proteins" Journal of Surface Engineered Materials and Advanced Technology, 3:13-19, 2013
Yuya Hirai, Emilie Louvet, Toshiyuki Oda, Masahiro Kumeta, Yuzo Watanabe, Tsuneyoshi Horigome and Kunio Takeyasu "A nucleolar scaffold protein, WDR46, determines the granular compartmental localization of nucleolin and DDX21" Genes to Cells, 18:780-797, 2013
Masahiro Kumeta, Yuya Hirai, Shige H. Yoshimura, Tsuneyoshi Horigome and Kunio Takeyasu "Antibody-based analysis reveals "filamentous vs. non-filamentous" and "cytoplasmic vs. nuclear" crosstalk of cytoskeletal proteins" Experimental Cell Research, 319:3226-3237, 2013
Shige H. Yoshimura, Shotaro Otsuka, Masahiro Kumeta, Mariko Taga and Kunio Takeyasu "Intermolecular disulfide bonds among nucleoporins regulate karyopherin-dependent nuclear transport" Journal of Cell Science, 126:3141-50, 2013
Masahiro Kumeta, Hideki Yamaguchi, Shige H. Yoshimura and Kunio Takeyasu "Karyopherin-independent spontaneous transport of amphiphilic proteins through the nuclear pore" Journal of Cell Science, 125:4979-84, 2012
Yoshiyuki Sowa, Michio Homma, Akihiko Ishijima and Richard M. Berry "Hybrid-fuel bacterial flagellar motors in Escherichia coli" PNAS, Early Edition:41645, 2014
Fan Bai, Yong-Suk Che, Nobunori Kami-ike, Qi Ma, Tohru Minamino, Yoshiyuki Sowa and Keiichi Namba "Populational Heterogeneity vs. Temporal Fluctuation in Escherichia coli Flagellar Motor Switching" Biophysical Journal, 105:2123-2129, 2013
Chien-Jung Lo, Yoshiyuki Sowa, Teuta Pilizota and Richard M. Berry "Mechanism and kinetics of a sodium-driven bacterial flagellar motor" PNAS, 110:E2544-E2551, 2013
Masayoshi Nishiyama, Yoshiyuki Sowa, Yoshifumi Kimura, Michio Homma, Akihiko Ishijima and Masahide Terazima "High Hydrostatic Pressure Induces Counterclockwise to Clockwise Reversals of the Escherichia coli Flagellar Motor" Journal of Bacteriology, 195:1809-1814, 2013
Masayoshi Nishiyama and Yoshiyuki Sowa "Microscopic analysis of bacterial motility at high pressure" Biophysical Journal, 102:1872–1880, 2012
So-ichiro Nishiyama, Daisuke Suzuki, Yasuaki Itoh, Kazuho Suzuki, Hirotaka Tajima, Akihiro Hyakutake, Michio Homma, Susan M. Butler-Wu, Andrew Camilli and Ikuro Kawagishi "Mlp24 (McpX) of Vibrio cholerae implicated in pathogenicity functions as a chemoreceptor for multiple amino acids" Infection and Immunity, 80(9):464072, 2012
